mkvmerge -o video.mkv --default-language eng \
  --compression -1:none --default-duration 0:41.708ms \
  --nalu-size-length 0:4 -A video.264 --compression -1:none \
   audio.dts subs.srt

Note that this doesn’t set the output language for the audio and subtitle tracks, but there’s only one of each, so I don’t really care. The key point is since this is an elementary h264 stream, I have to set the default-duration and nalu-size-length options manually, since they’re not encoded into the file. This default-duration corresponds to a 23.976fps frame rate, so you have to convert according to your source.

Really, the header compression option should be disabled by default; I have no idea why it’s on. It does save about 30MB of space in the output file, but that’s moot if it ruins compatibility.

• sudo apt-get install lirc
• Make your /etc/lirc/lircrc look like this:

##### GLOBAL #####
begin
  flags = startup_mode
  mode = smplayer
end

begin
  remote = PackBell
  button = Aux1
  mode = smplayer
end

begin
  button = Mute
  prog   = irexec
  repeat = 0
  config = amixer sset 'Master' toggle
end
begin
  button = VolUp
  prog   = irexec
  repeat = 2
  delay = 1
  config = amixer sset 'Master' 1+
end
begin
  button = VolDown
  prog   = irexec
  repeat = 2
  delay = 1
  config = amixer sset 'Master' 1-
end

##### MPLAYER #####
begin smplayer
  begin
      remote = PackBell
      prog = irexec
      button = Down
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action rewind2); fi
      repeat = 3
      delay = 1
  end

  begin
      remote = PackBell
      prog = irexec
      button = Up
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action forward2); fi
      repeat = 3
      delay = 1
  end

  begin
      remote = PackBell
      prog = irexec
      button = Right
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action forward1); fi
      repeat = 3
      delay = 1
  end

  begin
      remote = PackBell
      prog = irexec
      button = Left
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action rewind1); fi
      repeat = 3
      delay = 1
  end

  begin
      remote = PackBell
      prog = irexec
      button = Display
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action fullscreen); fi
      repeat = 0
      delay = 0
  end

  begin
      remote = PackBell
      prog = irexec
      button = CHUp
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action next_subtitle); fi
      repeat = 3
      delay = 0
  end

  begin
      remote = PackBell
      prog = irexec
      button = CHDown
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action next_audio); fi
      repeat = 3
      delay = 0
  end

  begin
      remote = PackBell
      prog = irexec
      button = LMB
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action pl_prev); fi
      repeat = 3
      delay = 0
  end

  begin
      remote = PackBell
      prog = irexec
      button = RMB
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action pl_next); fi
      repeat = 3
      delay = 0
  end

  begin
      remote = PackBell
      prog = irexec
      button = Zero
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action next_aspect); fi
      repeat = 3
      delay = 0
  end

  begin
      remote = PackBell
      prog = irexec
      button = One
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action rewind3); fi
      repeat = 3
      delay = 0
  end
  begin
      remote = PackBell
      prog = irexec
      button = Two
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action play_or_pause); fi
      repeat = 3
      delay = 0
  end
  begin
      remote = PackBell
      prog = irexec
      button = Three
      config = if [ $(ps -eo cmd | grep -c ^smplayer) -eq 1 ]; then (smplayer -send-action forward3); fi
      repeat = 3
      delay = 0
  end
end smplayer

• sudo /etc/init.d/lirc restart
• You should see the irexec daemon start
• Start smplayer and make it play something
• Push the AUX1 button on your Packard Bell remote
• Now push other buttons.  It should all work.

Thanks to all the blog posts and forum conversations that helped me figure all that out.

• Add this to /etc/sysctl.conf:

# Timing Correction
dev.rtc.max-user-freq=1024

Reboot and problems solved.